Variant report
| Variant | rs707283 |
|---|---|
| Chromosome Location | chr2:212834170-212834171 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10497957 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11695985 | 1.00[JPT][hapmap] |
| rs12997949 | 0.87[ASN][1000 genomes] |
| rs12998591 | 0.84[ASN][1000 genomes] |
| rs13025703 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16847207 | 0.86[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs16847218 | 0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs16847357 | 1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17414925 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2083297 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2139936 | 0.92[ASN][1000 genomes] |
| rs2139937 | 0.96[ASN][1000 genomes] |
| rs2579980 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs34306926 | 0.91[ASN][1000 genomes] |
| rs3452 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34765931 | 0.84[ASN][1000 genomes] |
| rs57175680 | 0.84[ASN][1000 genomes] |
| rs67565187 | 0.91[ASN][1000 genomes] |
| rs839509 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs839511 | 1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs839525 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs839526 | 0.92[ASN][1000 genomes] |
| rs839527 | 0.92[ASN][1000 genomes] |
| rs839528 | 0.87[ASN][1000 genomes] |
| rs839530 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs839536 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs864528 | 0.83[AFR][1000 genomes] |
| rs957698 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv834525 | chr2:212693190-212860356 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875791 | chr2:212824999-212874828 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv875792 | chr2:212824999-212896571 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv584343 | chr2:212830200-212906355 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
