Variant report

Variant	rs3452
Chromosome Location	chr2:212811406-212811407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12997949	0.96[ASN][1000 genomes]
rs13025703	0.87[ASN][1000 genomes]
rs16847218	0.90[ASN][1000 genomes]
rs16847357	0.89[ASN][1000 genomes]
rs17414925	0.87[ASN][1000 genomes]
rs2139936	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2139937	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2579980	0.94[ASN][1000 genomes]
rs34306926	0.96[ASN][1000 genomes]
rs57175680	0.90[ASN][1000 genomes]
rs67565187	0.96[ASN][1000 genomes]
rs839509	1.00[ASN][1000 genomes]
rs839511	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs839525	0.98[ASN][1000 genomes]
rs839526	0.98[ASN][1000 genomes]
rs839527	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs839528	0.92[ASN][1000 genomes]
rs839530	0.94[ASN][1000 genomes]
rs839536	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212806800-212816400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212811400-212812200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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