Variant report
| Variant | rs839528 |
|---|---|
| Chromosome Location | chr2:212802355-212802356 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:212802067..212803693-chr2:212817680..212819579,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12997949 | 0.96[ASN][1000 genomes] |
| rs13025703 | 0.85[EUR][1000 genomes] |
| rs16847207 | 0.83[ASN][1000 genomes] |
| rs16847218 | 0.90[ASN][1000 genomes] |
| rs16847357 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2139936 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2139937 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2579980 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34306926 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3452 | 0.92[ASN][1000 genomes] |
| rs57175680 | 0.90[ASN][1000 genomes] |
| rs67565187 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs839509 | 0.88[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs839511 | 0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs839519 | 0.85[AFR][1000 genomes] |
| rs839525 | 0.87[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs839526 | 0.87[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs839527 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs839530 | 0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs839536 | 0.96[ASN][1000 genomes] |
| rs839540 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv834525 | chr2:212693190-212860356 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3459968 | chr2:212801787-212809404 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3459969 | chr2:212801787-212809404 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv20047 | chr2:212801927-212809271 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212796400-212804800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr2:212802200-212802800 | Enhancers | Dnd41 | blood |
