Variant report

Variant	rs707284
Chromosome Location	chr2:212839046-212839047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10205607	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs10497954	0.85[CHB][hapmap]
rs12473131	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12613571	0.85[CHB][hapmap]
rs12616932	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs12623434	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs1402719	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847307	0.85[CHB][hapmap]
rs16847322	0.85[CHB][hapmap]
rs2102996	0.85[CHB][hapmap]
rs2685006	0.96[ASN][1000 genomes]
rs2888037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4672629	0.85[CHB][hapmap]
rs4673644	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6435682	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6707590	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6744796	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs72935738	0.90[ASN][1000 genomes]
rs839499	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs839500	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs839501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs839504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs839512	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs839515	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs839516	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs839517	0.86[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs839518	0.96[ASN][1000 genomes]
rs839519	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs839520	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[ASN][1000 genomes]
rs839521	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs839522	0.96[ASN][1000 genomes]
rs839523	0.83[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs839540	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs839541	0.95[ASN][1000 genomes]
rs860821	0.93[ASN][1000 genomes]
rs864528	0.96[ASN][1000 genomes]
rs987321	0.83[CHB][hapmap]
rs987322	0.80[CHB][hapmap]
rs990741	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875791	chr2:212824999-212874828	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875792	chr2:212824999-212896571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv584343	chr2:212830200-212906355	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1012269	chr2:212837487-212915640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv525127	chr2:212839046-212916758	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs707284	RPE	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links