Variant report

Variant	rs10205892
Chromosome Location	chr2:206175692-206175693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10199654	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10490295	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10804147	0.80[ASN][1000 genomes]
rs10932102	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10932104	0.80[ASN][1000 genomes]
rs1113314	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11677457	0.80[ASN][1000 genomes]
rs11690439	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11690480	0.80[ASN][1000 genomes]
rs11690561	0.80[ASN][1000 genomes]
rs11692923	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11695465	0.80[ASN][1000 genomes]
rs12464755	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12468755	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12468794	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12470434	0.82[ASN][1000 genomes]
rs12474300	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12476682	0.80[ASN][1000 genomes]
rs12615597	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12622101	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12623757	0.80[ASN][1000 genomes]
rs12989507	0.80[ASN][1000 genomes]
rs13004164	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13004568	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13009974	0.80[ASN][1000 genomes]
rs13011880	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13011981	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13022810	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1511873	0.80[ASN][1000 genomes]
rs1511874	0.80[ASN][1000 genomes]
rs1540365	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1540366	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1540367	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1540368	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1540369	0.81[ASN][1000 genomes]
rs1606238	0.80[ASN][1000 genomes]
rs1606239	0.80[ASN][1000 genomes]
rs17201041	0.80[ASN][1000 genomes]
rs1861508	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1861509	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1861514	0.80[ASN][1000 genomes]
rs1921805	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2080418	0.80[ASN][1000 genomes]
rs2080419	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2160455	0.82[ASN][1000 genomes]
rs2336416	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2336417	0.80[ASN][1000 genomes]
rs2336418	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2336419	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2704642	0.83[ASN][1000 genomes]
rs34226321	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3843339	0.82[ASN][1000 genomes]
rs3845806	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3856509	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3928642	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4119079	0.88[ASN][1000 genomes]
rs4119081	0.88[ASN][1000 genomes]
rs4505506	0.80[ASN][1000 genomes]
rs4673318	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4673319	0.82[ASN][1000 genomes]
rs4673320	0.80[ASN][1000 genomes]
rs4673323	0.80[EUR][1000 genomes]
rs4675508	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4675510	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4675511	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4675513	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4675515	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4675519	0.80[ASN][1000 genomes]
rs55850246	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62171506	0.80[ASN][1000 genomes]
rs6758445	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6761373	0.82[ASN][1000 genomes]
rs7582340	0.86[ASN][1000 genomes]
rs7594732	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206161200-206177000	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:206163800-206177200	Weak transcription	Fetal Lung	lung
3	chr2:206165600-206177200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
5	chr2:206168800-206176200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:206171000-206183400	Weak transcription	Aorta	Aorta
7	chr2:206171000-206186200	Weak transcription	HSMMtube	muscle
8	chr2:206171000-206190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:206172600-206185400	Weak transcription	HSMM	muscle

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