The 2.0 version of rSNPBase

Variant report

Variant rs1540365
Chromosome Location chr2:206170122-206170123
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:19 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:206097200-206170600 Weak transcription HSMMtube muscle
2 chr2:206157000-206170400 Weak transcription H1 Cell Line embryonic stem cell
3 chr2:206157000-206170800 Weak transcription Aorta Aorta
4 chr2:206157400-206170800 Weak transcription Pancreas Pancrea
5 chr2:206161200-206177000 Weak transcription Colon Smooth Muscle Colon
6 chr2:206163800-206177200 Weak transcription Fetal Lung lung
7 chr2:206165200-206171000 Weak transcription Left Ventricle heart
8 chr2:206165600-206177200 Weak transcription Rectal Smooth Muscle rectum
9 chr2:206166600-206171600 Weak transcription Liver Liver
10 chr2:206167600-206172400 Weak transcription Fetal Muscle Trunk muscle
11 chr2:206167800-206170400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr2:206168400-206170400 Weak transcription Fetal Stomach stomach
13 chr2:206168600-206172400 Weak transcription Stomach Smooth Muscle stomach
14 chr2:206168600-206173400 Weak transcription Ovary ovary
15 chr2:206168600-206190600 Weak transcription Fetal Intestine Large intestine
16 chr2:206168800-206171400 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr2:206168800-206176200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr2:206169800-206170200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
19 chr2:206169800-206171000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015