Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10187682	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207227	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677135	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389161	1.00[ASN][1000 genomes]
rs13389502	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395282	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414808	1.00[ASN][1000 genomes]
rs13417895	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13418029	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13419302	1.00[ASN][1000 genomes]
rs1355342	1.00[ASN][1000 genomes]
rs1434157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060399	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28474701	1.00[ASN][1000 genomes]
rs6716363	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731783	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761835	1.00[ASN][1000 genomes]
rs73053146	1.00[ASN][1000 genomes]
rs7566341	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593901	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9288363	1.00[YRI][hapmap]
rs985164	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205921400-205943600	Weak transcription	Aorta	Aorta
2	chr2:205925400-205934400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:205925400-205934600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:205925800-205934600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:205927400-205934400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:205931200-205934600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:205932600-205932800	Enhancers	HSMMtube	muscle

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