Variant report
| Variant | rs10210173 |
|---|---|
| Chromosome Location | chr2:185821339-185821340 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10183560 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10184392 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10497657 | 1.00[CHB][hapmap] |
| rs10497659 | 1.00[CHB][hapmap] |
| rs10497660 | 1.00[CHB][hapmap] |
| rs10497661 | 1.00[CHB][hapmap] |
| rs11902536 | 1.00[CHB][hapmap] |
| rs12477430 | 0.85[YRI][hapmap] |
| rs13386401 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1366843 | 1.00[CHB][hapmap] |
| rs1366845 | 1.00[CHB][hapmap] |
| rs16826189 | 1.00[JPT][hapmap] |
| rs17431119 | 1.00[CHB][hapmap] |
| rs17431153 | 1.00[CHB][hapmap] |
| rs17431258 | 1.00[CHB][hapmap] |
| rs17431582 | 1.00[CHB][hapmap] |
| rs17431776 | 1.00[CHB][hapmap] |
| rs17431804 | 1.00[CHB][hapmap] |
| rs17509517 | 1.00[CHB][hapmap] |
| rs17509873 | 1.00[CHB][hapmap] |
| rs1820847 | 1.00[CHB][hapmap] |
| rs6751736 | 0.83[YRI][hapmap] |
| rs72894907 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72894910 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7585171 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532412 | chr2:185347334-186108701 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv520974 | chr2:185742474-186148230 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:185821000-185821600 | Enhancers | Adipose Nuclei | Adipose |
