Variant report

Variant	rs10497657
Chromosome Location	chr2:185645840-185645841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10497659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs10497662	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1114248	1.00[CEU][hapmap];0.90[GIH][hapmap];0.92[TSI][hapmap]
rs11902536	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1366843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1366845	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17430586	1.00[CHB][hapmap]
rs17430621	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17430628	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[ASN][1000 genomes]
rs17430635	1.00[CHB][hapmap]
rs17430952	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17430973	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17431119	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17431153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17431582	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17431603	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17431776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17431804	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs17508485	1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs17508623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17508644	1.00[CHB][hapmap]
rs17508671	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17508706	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17508767	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17508905	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17509003	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17509517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17509873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs1820847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35676856	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61739290	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs722385	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72893092	0.91[EUR][1000 genomes]
rs72893100	0.91[EUR][1000 genomes]
rs72897732	1.00[ASN][1000 genomes]
rs72897733	1.00[ASN][1000 genomes]
rs72897737	1.00[ASN][1000 genomes]
rs72897742	1.00[ASN][1000 genomes]
rs72897758	1.00[ASN][1000 genomes]
rs72897775	1.00[ASN][1000 genomes]
rs72897782	1.00[ASN][1000 genomes]
rs72897793	1.00[ASN][1000 genomes]
rs72897795	1.00[ASN][1000 genomes]
rs72897799	1.00[ASN][1000 genomes]
rs72897802	1.00[ASN][1000 genomes]
rs72899904	1.00[ASN][1000 genomes]
rs72899906	1.00[ASN][1000 genomes]
rs72899915	1.00[ASN][1000 genomes]
rs72899918	1.00[ASN][1000 genomes]
rs72899932	1.00[ASN][1000 genomes]
rs72899952	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899961	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899964	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899966	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899969	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899975	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899976	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899981	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899983	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72899986	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901820	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901831	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901834	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901836	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72901840	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901862	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901873	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901885	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901891	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901893	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901901	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903719	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903723	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903776	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903783	0.94[EUR][1000 genomes]
rs72903792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72903798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905716	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905749	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905751	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905782	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905784	0.94[EUR][1000 genomes]
rs72905785	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907715	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72907717	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907766	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7585171	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs990844	1.00[CHB][hapmap];0.83[CHD][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185645200-185646000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:185645200-185647000	Enhancers	HUVEC	blood vessel
3	chr2:185645400-185646800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr2:185645600-185646000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:185645600-185646000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:185645600-185646000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:185645600-185646000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:185645600-185646200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:185645800-185646200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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