Variant report

Variant	rs72907766
Chromosome Location	chr2:185772976-185772977
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10497657	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10497659	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10497660	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10497662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366843	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17431153	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17431603	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17431776	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17431804	0.90[EUR][1000 genomes]
rs17509517	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17509873	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1820847	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35676856	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61739290	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72893092	0.92[EUR][1000 genomes]
rs72893100	0.92[EUR][1000 genomes]
rs72901820	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72901831	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72901834	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72901836	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72901840	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72901862	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72901873	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72901885	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72901891	0.88[EUR][1000 genomes]
rs72901893	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72901901	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72903719	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72903720	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72903723	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72903763	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72903776	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72903778	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72903783	0.86[EUR][1000 genomes]
rs72903792	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72903798	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72905716	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72905722	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72905730	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72905749	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905751	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905782	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905784	0.94[EUR][1000 genomes]
rs72905785	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907715	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72907717	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv821846	chr2:185753228-185774831	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv517466	chr2:185756082-185778262	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185772800-185773000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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