Variant report

Variant	rs72905716
Chromosome Location	chr2:185690060-185690061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10497657	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10497659	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10497660	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10497662	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1366843	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17430628	0.90[ASN][1000 genomes]
rs17431153	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17431603	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17431776	0.92[EUR][1000 genomes]
rs17431804	0.88[EUR][1000 genomes]
rs17508623	0.90[ASN][1000 genomes]
rs17508706	0.90[ASN][1000 genomes]
rs17509517	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509873	0.92[EUR][1000 genomes]
rs1820847	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35676856	0.92[EUR][1000 genomes]
rs61739290	0.92[EUR][1000 genomes]
rs722385	0.90[ASN][1000 genomes]
rs72893092	0.90[EUR][1000 genomes]
rs72893100	0.90[EUR][1000 genomes]
rs72897732	0.90[ASN][1000 genomes]
rs72897733	0.90[ASN][1000 genomes]
rs72897737	0.90[ASN][1000 genomes]
rs72897742	0.90[ASN][1000 genomes]
rs72897758	0.90[ASN][1000 genomes]
rs72897775	0.90[ASN][1000 genomes]
rs72897782	0.90[ASN][1000 genomes]
rs72897793	0.90[ASN][1000 genomes]
rs72897795	0.90[ASN][1000 genomes]
rs72897799	0.90[ASN][1000 genomes]
rs72897802	0.90[ASN][1000 genomes]
rs72899904	0.90[ASN][1000 genomes]
rs72899906	0.90[ASN][1000 genomes]
rs72899915	0.90[ASN][1000 genomes]
rs72899918	0.90[ASN][1000 genomes]
rs72899932	0.90[ASN][1000 genomes]
rs72899952	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899961	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899964	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899966	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899969	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899975	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899976	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899981	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899983	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72899986	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901820	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901831	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901834	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901836	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72901840	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901862	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901873	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901885	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72901891	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901893	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901901	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903719	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903720	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903723	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903763	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903776	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903778	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903783	0.92[EUR][1000 genomes]
rs72903792	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72903798	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905722	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905730	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905749	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72905751	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72905782	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72905784	0.92[EUR][1000 genomes]
rs72905785	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72907715	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72907717	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72907766	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs990844	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185689600-185695400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links