Variant report

Variant	rs72899969
Chromosome Location	chr2:185549119-185549120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10497657	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497659	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497660	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366843	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17430628	1.00[ASN][1000 genomes]
rs17431153	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431603	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17508485	0.80[AMR][1000 genomes]
rs17508623	1.00[ASN][1000 genomes]
rs17508706	1.00[ASN][1000 genomes]
rs17509517	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1820847	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs722385	1.00[ASN][1000 genomes]
rs72897732	1.00[ASN][1000 genomes]
rs72897733	1.00[ASN][1000 genomes]
rs72897737	1.00[ASN][1000 genomes]
rs72897742	1.00[ASN][1000 genomes]
rs72897758	1.00[ASN][1000 genomes]
rs72897775	1.00[ASN][1000 genomes]
rs72897782	1.00[ASN][1000 genomes]
rs72897793	1.00[ASN][1000 genomes]
rs72897795	1.00[ASN][1000 genomes]
rs72897799	1.00[ASN][1000 genomes]
rs72897802	1.00[ASN][1000 genomes]
rs72899904	1.00[ASN][1000 genomes]
rs72899906	1.00[ASN][1000 genomes]
rs72899915	1.00[ASN][1000 genomes]
rs72899918	1.00[ASN][1000 genomes]
rs72899932	1.00[ASN][1000 genomes]
rs72899952	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899961	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899964	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899966	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899975	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899976	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899981	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899983	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72899986	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901820	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901831	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901834	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901836	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72901840	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901862	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901873	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901885	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72901891	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901893	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901901	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903719	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903720	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903723	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72903763	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903776	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903778	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903792	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72903798	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905716	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905722	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905730	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905749	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72905751	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72905782	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72905785	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72907715	1.00[AMR][1000 genomes]
rs72907717	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs990844	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185544200-185550600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:185545200-185557000	Weak transcription	Fetal Stomach	stomach
3	chr2:185545800-185552200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:185546000-185550600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:185548600-185552200	Enhancers	NHEK	skin
6	chr2:185549000-185551000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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