Variant report

Variant	rs990844
Chromosome Location	chr2:185519085-185519086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10497657	1.00[CHB][hapmap];0.83[CHD][hapmap];0.90[ASN][1000 genomes]
rs10497659	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10497660	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17430586	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17430621	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17430628	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17430635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17430952	1.00[CHB][hapmap]
rs17430973	1.00[CHB][hapmap]
rs17431119	1.00[CHB][hapmap]
rs17431153	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17431258	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17508623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17508644	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17508671	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17508706	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17508767	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17508905	1.00[CHB][hapmap]
rs17509003	1.00[CHB][hapmap]
rs17509517	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs722385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897732	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897733	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897737	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897742	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897775	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72897802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72899952	0.90[ASN][1000 genomes]
rs72899961	0.90[ASN][1000 genomes]
rs72899964	0.90[ASN][1000 genomes]
rs72899966	0.90[ASN][1000 genomes]
rs72899969	0.90[ASN][1000 genomes]
rs72899975	0.90[ASN][1000 genomes]
rs72899976	0.90[ASN][1000 genomes]
rs72899981	0.90[ASN][1000 genomes]
rs72899986	0.90[ASN][1000 genomes]
rs72901820	0.90[ASN][1000 genomes]
rs72901831	0.90[ASN][1000 genomes]
rs72901834	0.90[ASN][1000 genomes]
rs72901840	0.90[ASN][1000 genomes]
rs72901862	0.90[ASN][1000 genomes]
rs72901873	0.90[ASN][1000 genomes]
rs72901891	0.90[ASN][1000 genomes]
rs72901893	0.90[ASN][1000 genomes]
rs72901901	0.90[ASN][1000 genomes]
rs72903719	0.90[ASN][1000 genomes]
rs72903720	0.90[ASN][1000 genomes]
rs72903723	0.90[ASN][1000 genomes]
rs72903763	0.90[ASN][1000 genomes]
rs72903776	0.81[ASN][1000 genomes]
rs72903778	0.81[ASN][1000 genomes]
rs72903798	0.81[ASN][1000 genomes]
rs72905716	0.81[ASN][1000 genomes]
rs72905722	0.81[ASN][1000 genomes]
rs72905730	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185511200-185519600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:185516400-185527600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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