Variant report

Variant	rs17508671
Chromosome Location	chr2:185491847-185491848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:185486351..185488034-chr2:185491141..185493410,2	K562	blood:
2	chr2:185490085..185492115-chr2:185496975..185498894,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10497657	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[ASN][1000 genomes]
rs10497659	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10497660	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17430586	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17430621	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17430628	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17430635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17430952	1.00[CHB][hapmap]
rs17430973	1.00[CHB][hapmap]
rs17431119	1.00[CHB][hapmap]
rs17431153	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17431258	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17508623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17508644	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17508706	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17508767	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17508905	1.00[CHB][hapmap]
rs17509003	1.00[CHB][hapmap]
rs17509517	0.90[ASN][1000 genomes]
rs722385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897732	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897733	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897737	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897742	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897775	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899952	1.00[ASN][1000 genomes]
rs72899961	1.00[ASN][1000 genomes]
rs72899964	1.00[ASN][1000 genomes]
rs72899966	1.00[ASN][1000 genomes]
rs72899969	1.00[ASN][1000 genomes]
rs72899975	1.00[ASN][1000 genomes]
rs72899976	1.00[ASN][1000 genomes]
rs72899981	1.00[ASN][1000 genomes]
rs72899983	0.82[ASN][1000 genomes]
rs72899986	1.00[ASN][1000 genomes]
rs72901820	1.00[ASN][1000 genomes]
rs72901831	1.00[ASN][1000 genomes]
rs72901834	1.00[ASN][1000 genomes]
rs72901840	1.00[ASN][1000 genomes]
rs72901862	1.00[ASN][1000 genomes]
rs72901873	1.00[ASN][1000 genomes]
rs72901891	1.00[ASN][1000 genomes]
rs72901893	1.00[ASN][1000 genomes]
rs72901901	1.00[ASN][1000 genomes]
rs72903719	1.00[ASN][1000 genomes]
rs72903720	1.00[ASN][1000 genomes]
rs72903723	1.00[ASN][1000 genomes]
rs72903763	1.00[ASN][1000 genomes]
rs72903776	0.90[ASN][1000 genomes]
rs72903778	0.90[ASN][1000 genomes]
rs72903792	0.82[ASN][1000 genomes]
rs72903798	0.90[ASN][1000 genomes]
rs72905716	0.90[ASN][1000 genomes]
rs72905722	0.90[ASN][1000 genomes]
rs72905730	0.90[ASN][1000 genomes]
rs990844	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv1818452	chr2:185428946-185503154	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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