Variant report

Variant	rs17431804
Chromosome Location	chr2:185797580-185797581
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10497657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs10497659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs10497660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs10497661	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10497662	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1114248	1.00[CEU][hapmap]
rs11902536	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1366843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366845	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17431119	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17431153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs17431258	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17431582	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17431603	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs17509873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607558	1.00[AFR][1000 genomes]
rs35676856	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61739290	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72893092	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893100	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894963	0.89[ASN][1000 genomes]
rs72901831	0.80[EUR][1000 genomes]
rs72901836	0.80[EUR][1000 genomes]
rs72901840	0.80[EUR][1000 genomes]
rs72901862	0.80[EUR][1000 genomes]
rs72901873	0.80[EUR][1000 genomes]
rs72901885	0.87[EUR][1000 genomes]
rs72901891	0.85[EUR][1000 genomes]
rs72901893	0.87[EUR][1000 genomes]
rs72901901	0.87[EUR][1000 genomes]
rs72903719	0.90[EUR][1000 genomes]
rs72903720	0.90[EUR][1000 genomes]
rs72903723	0.81[EUR][1000 genomes]
rs72903763	0.90[EUR][1000 genomes]
rs72903776	0.85[EUR][1000 genomes]
rs72903778	0.90[EUR][1000 genomes]
rs72903783	0.84[EUR][1000 genomes]
rs72903792	0.90[EUR][1000 genomes]
rs72903798	0.90[EUR][1000 genomes]
rs72905716	0.88[EUR][1000 genomes]
rs72905722	0.90[EUR][1000 genomes]
rs72905730	0.90[EUR][1000 genomes]
rs72905749	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905751	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72905782	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905784	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905785	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907715	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907717	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907766	0.90[EUR][1000 genomes]
rs7585171	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185792000-185805000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:185796800-185798200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:185797200-185798200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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