Variant report

Variant	rs10211141
Chromosome Location	chr2:189523295-189523296
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10153871	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10199260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs10804021	1.00[JPT][hapmap]
rs10931363	1.00[JPT][hapmap]
rs11686702	1.00[ASN][1000 genomes]
rs11695316	1.00[JPT][hapmap]
rs12463744	1.00[JPT][hapmap]
rs12475894	1.00[JPT][hapmap]
rs12476413	1.00[JPT][hapmap]
rs13025659	1.00[JPT][hapmap]
rs13386581	0.91[AMR][1000 genomes]
rs13386959	1.00[JPT][hapmap]
rs13391137	0.93[AFR][1000 genomes]
rs13392850	1.00[JPT][hapmap]
rs13393057	1.00[JPT][hapmap]
rs13396968	1.00[JPT][hapmap]
rs13397653	1.00[JPT][hapmap]
rs13412448	1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes]
rs13413752	0.84[AMR][1000 genomes]
rs13414327	1.00[JPT][hapmap]
rs13418031	1.00[JPT][hapmap]
rs1354902	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1354904	1.00[JPT][hapmap]
rs1354910	1.00[JPT][hapmap]
rs1507551	1.00[JPT][hapmap]
rs1567184	1.00[JPT][hapmap]
rs28448381	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2882532	1.00[ASN][1000 genomes]
rs3935690	1.00[ASN][1000 genomes]
rs4146571	1.00[ASN][1000 genomes]
rs4453658	1.00[JPT][hapmap]
rs4667229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4667231	1.00[JPT][hapmap]
rs4667246	0.82[EUR][1000 genomes]
rs57943055	0.92[EUR][1000 genomes]
rs58633000	0.92[EUR][1000 genomes]
rs60102741	0.92[EUR][1000 genomes]
rs6707212	1.00[JPT][hapmap]
rs6709557	1.00[JPT][hapmap]
rs6744275	1.00[JPT][hapmap]
rs6756504	1.00[JPT][hapmap]
rs7419798	1.00[JPT][hapmap]
rs7420808	1.00[JPT][hapmap]
rs7422739	1.00[JPT][hapmap]
rs7423554	1.00[JPT][hapmap]
rs7569960	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7573579	0.92[EUR][1000 genomes]
rs7574550	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7582643	1.00[JPT][hapmap]
rs7587596	1.00[JPT][hapmap]
rs7599158	0.87[AFR][1000 genomes]
rs7602180	1.00[JPT][hapmap]
rs7603970	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189521200-189528000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:189523200-189523400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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