Variant report

Variant	rs11686702
Chromosome Location	chr2:189521429-189521430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10173369	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10199260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10211141	1.00[ASN][1000 genomes]
rs1066766	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10804021	1.00[JPT][hapmap]
rs10931363	1.00[JPT][hapmap]
rs10931374	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs11695316	1.00[JPT][hapmap]
rs11889220	0.83[AMR][1000 genomes]
rs12463744	1.00[JPT][hapmap]
rs12475894	1.00[JPT][hapmap]
rs12476413	1.00[JPT][hapmap]
rs12693504	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs13025659	1.00[JPT][hapmap]
rs13386959	1.00[JPT][hapmap]
rs13392850	1.00[JPT][hapmap]
rs13393057	1.00[JPT][hapmap]
rs13396968	1.00[JPT][hapmap]
rs13397653	1.00[JPT][hapmap]
rs13412448	1.00[JPT][hapmap]
rs13414327	1.00[JPT][hapmap]
rs13418031	1.00[JPT][hapmap]
rs1354902	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1354904	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1354910	1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[EUR][1000 genomes]
rs1395867	0.82[EUR][1000 genomes]
rs1395869	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1507551	1.00[JPT][hapmap]
rs1507560	0.81[AMR][1000 genomes]
rs1507562	0.82[EUR][1000 genomes]
rs1567184	1.00[JPT][hapmap]
rs1588121	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1605460	0.82[EUR][1000 genomes]
rs16830169	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2350903	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2882532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935690	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146570	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4146571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4453658	1.00[JPT][hapmap]
rs4591284	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4667229	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4667231	1.00[JPT][hapmap]
rs6434291	0.82[EUR][1000 genomes]
rs6434292	0.82[EUR][1000 genomes]
rs6707212	1.00[JPT][hapmap]
rs6709557	1.00[JPT][hapmap]
rs6744275	1.00[JPT][hapmap]
rs6756504	1.00[JPT][hapmap]
rs698552	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs698554	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs698556	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs698557	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7419798	1.00[JPT][hapmap]
rs7420808	1.00[JPT][hapmap]
rs7422739	1.00[JPT][hapmap]
rs7423554	1.00[JPT][hapmap]
rs7425417	0.83[CEU][hapmap]
rs7577912	0.82[EUR][1000 genomes]
rs7582643	1.00[JPT][hapmap]
rs7587596	1.00[JPT][hapmap]
rs7599978	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7602180	1.00[JPT][hapmap]
rs781283	0.91[CEU][hapmap]
rs781284	0.91[CEU][hapmap]
rs781286	0.91[CEU][hapmap]
rs781288	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189520400-189521600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:189521200-189528000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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