Variant report

Variant	rs1605460
Chromosome Location	chr2:189483097-189483098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1092261	0.90[EUR][1000 genomes]
rs11686702	0.82[EUR][1000 genomes]
rs12693504	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13007902	0.83[EUR][1000 genomes]
rs1354902	0.84[EUR][1000 genomes]
rs1395867	0.93[EUR][1000 genomes]
rs1395869	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1507562	0.93[EUR][1000 genomes]
rs16830169	1.00[EUR][1000 genomes]
rs2678360	0.84[EUR][1000 genomes]
rs2882532	0.82[EUR][1000 genomes]
rs2945414	0.84[EUR][1000 genomes]
rs3935690	0.82[EUR][1000 genomes]
rs4146571	0.82[EUR][1000 genomes]
rs6434291	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6434292	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs698570	0.83[EUR][1000 genomes]
rs698571	0.83[EUR][1000 genomes]
rs7425417	0.95[EUR][1000 genomes]
rs7577912	1.00[EUR][1000 genomes]
rs781264	0.83[EUR][1000 genomes]
rs781454	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv834489	chr2:189329027-189494224	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189470800-189484000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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