Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189553470..189554187-chr6:29381441..29382421,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1066766	0.84[EUR][1000 genomes]
rs1084170	0.81[EUR][1000 genomes]
rs12693504	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs13007902	0.92[EUR][1000 genomes]
rs1354902	0.91[CEU][hapmap]
rs1395867	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1395869	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs1507562	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1588121	0.84[EUR][1000 genomes]
rs1605460	0.90[EUR][1000 genomes]
rs16830169	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs16830514	0.84[EUR][1000 genomes]
rs1916961	0.88[EUR][1000 genomes]
rs2678360	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2945414	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6434291	0.90[EUR][1000 genomes]
rs6434292	0.90[EUR][1000 genomes]
rs698552	0.84[EUR][1000 genomes]
rs698554	0.84[EUR][1000 genomes]
rs698556	0.84[EUR][1000 genomes]
rs698557	0.83[EUR][1000 genomes]
rs698570	0.92[EUR][1000 genomes]
rs698571	0.92[EUR][1000 genomes]
rs7425417	0.83[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs7577912	0.90[EUR][1000 genomes]
rs781248	0.84[EUR][1000 genomes]
rs781264	0.92[EUR][1000 genomes]
rs781283	0.91[CEU][hapmap]
rs781284	0.91[CEU][hapmap]
rs781286	0.91[CEU][hapmap]
rs781288	0.91[CEU][hapmap]
rs781454	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189551000-189557200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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