Variant report

Variant	rs698554
Chromosome Location	chr2:189551962-189551963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10173369	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1066766	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10804021	1.00[JPT][hapmap]
rs1092261	0.84[EUR][1000 genomes]
rs10931363	1.00[JPT][hapmap]
rs10931374	0.88[AMR][1000 genomes]
rs10931376	0.82[EUR][1000 genomes]
rs11676859	0.82[EUR][1000 genomes]
rs11686702	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11695316	1.00[JPT][hapmap]
rs12463744	1.00[JPT][hapmap]
rs12475894	1.00[JPT][hapmap]
rs12476413	1.00[JPT][hapmap]
rs12693504	0.91[CEU][hapmap]
rs13011602	0.82[EUR][1000 genomes]
rs13393057	1.00[JPT][hapmap]
rs13396968	1.00[JPT][hapmap]
rs13412448	1.00[JPT][hapmap]
rs1354902	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1354904	1.00[JPT][hapmap]
rs1354910	1.00[JPT][hapmap]
rs1395867	0.82[EUR][1000 genomes]
rs1395868	0.82[EUR][1000 genomes]
rs1395869	0.91[CEU][hapmap]
rs1507551	1.00[JPT][hapmap]
rs1507562	0.82[EUR][1000 genomes]
rs1567184	1.00[JPT][hapmap]
rs1588121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16830169	0.91[CEU][hapmap]
rs28448381	1.00[ASN][1000 genomes]
rs2882532	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3935690	0.87[EUR][1000 genomes]
rs4146571	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4666765	0.83[ASN][1000 genomes]
rs4667231	1.00[JPT][hapmap]
rs6707212	1.00[JPT][hapmap]
rs6756504	1.00[JPT][hapmap]
rs698552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs698556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs698557	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7419798	1.00[JPT][hapmap]
rs7420808	1.00[JPT][hapmap]
rs7422739	1.00[JPT][hapmap]
rs7423554	1.00[JPT][hapmap]
rs7425417	0.83[CEU][hapmap]
rs7574550	0.83[ASN][1000 genomes]
rs7582643	1.00[JPT][hapmap]
rs7587596	1.00[JPT][hapmap]
rs7599978	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602180	1.00[JPT][hapmap]
rs7603970	1.00[ASN][1000 genomes]
rs781283	0.91[CEU][hapmap]
rs781284	0.91[CEU][hapmap]
rs781286	0.91[CEU][hapmap]
rs781288	0.91[CEU][hapmap]
rs781454	0.84[EUR][1000 genomes]
rs955813	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3369869	chr2:189551903-189552121	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189551000-189557200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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