Variant report

Variant	rs10931376
Chromosome Location	chr2:189542052-189542053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10173411	0.88[ASN][1000 genomes]
rs1066766	0.82[EUR][1000 genomes]
rs10931369	0.87[EUR][1000 genomes]
rs11676859	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11683089	0.88[EUR][1000 genomes]
rs11683183	0.88[EUR][1000 genomes]
rs11889220	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11889402	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463744	0.87[EUR][1000 genomes]
rs12988921	0.83[EUR][1000 genomes]
rs13011602	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354904	0.85[EUR][1000 genomes]
rs1354908	0.87[EUR][1000 genomes]
rs1354910	0.87[EUR][1000 genomes]
rs1395868	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507560	0.86[EUR][1000 genomes]
rs1507561	0.87[EUR][1000 genomes]
rs1567184	0.87[EUR][1000 genomes]
rs1580993	0.87[EUR][1000 genomes]
rs1588121	0.82[EUR][1000 genomes]
rs1911602	0.81[EUR][1000 genomes]
rs1911603	0.83[AMR][1000 genomes]
rs2350903	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4146570	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4591284	0.89[EUR][1000 genomes]
rs59665009	0.86[AMR][1000 genomes]
rs6708451	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs698552	0.82[EUR][1000 genomes]
rs698553	1.00[ASN][1000 genomes]
rs698554	0.82[EUR][1000 genomes]
rs698556	0.82[EUR][1000 genomes]
rs698557	0.83[EUR][1000 genomes]
rs7596299	0.88[EUR][1000 genomes]
rs7609211	1.00[ASN][1000 genomes]
rs8273	0.88[EUR][1000 genomes]
rs955813	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9752583	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189539400-189542400	Enhancers	HSMM	muscle
2	chr2:189539600-189543400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:189540000-189542400	Enhancers	Osteobl	bone
4	chr2:189540200-189542200	Enhancers	NHDF-Ad	bronchial
5	chr2:189540800-189542400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:189541200-189545000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:189541600-189543400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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