Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10172178	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10173411	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203054	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10931376	0.88[ASN][1000 genomes]
rs11676859	0.88[ASN][1000 genomes]
rs11695316	0.80[EUR][1000 genomes]
rs11889220	0.94[ASN][1000 genomes]
rs11889402	0.88[ASN][1000 genomes]
rs13011602	0.88[ASN][1000 genomes]
rs13393057	0.80[EUR][1000 genomes]
rs13413644	0.80[EUR][1000 genomes]
rs13424809	0.80[EUR][1000 genomes]
rs1395868	0.88[ASN][1000 genomes]
rs1507551	0.80[EUR][1000 genomes]
rs1807235	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4577225	0.80[EUR][1000 genomes]
rs61045757	0.80[EUR][1000 genomes]
rs698553	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7609211	0.88[ASN][1000 genomes]
rs955813	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189529400-189539000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:189532800-189539200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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