Variant report
| Variant | rs698553 |
|---|---|
| Chromosome Location | chr2:189544569-189544570 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10153871 | 0.81[EUR][1000 genomes] |
| rs10172178 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10173411 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10203054 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10931376 | 1.00[ASN][1000 genomes] |
| rs11676859 | 0.88[ASN][1000 genomes] |
| rs11695316 | 0.85[EUR][1000 genomes] |
| rs11889220 | 0.82[ASN][1000 genomes] |
| rs11889402 | 1.00[ASN][1000 genomes] |
| rs13011602 | 1.00[ASN][1000 genomes] |
| rs13386581 | 0.81[EUR][1000 genomes] |
| rs13393057 | 0.85[EUR][1000 genomes] |
| rs13396968 | 0.81[EUR][1000 genomes] |
| rs13412448 | 0.81[EUR][1000 genomes] |
| rs13413644 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13424809 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1395868 | 1.00[ASN][1000 genomes] |
| rs1507551 | 0.85[EUR][1000 genomes] |
| rs1807235 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4577225 | 0.85[EUR][1000 genomes] |
| rs61045757 | 0.85[EUR][1000 genomes] |
| rs66641143 | 0.81[EUR][1000 genomes] |
| rs7568147 | 0.81[EUR][1000 genomes] |
| rs7609211 | 1.00[ASN][1000 genomes] |
| rs955813 | 1.00[ASN][1000 genomes] |
| rs9752583 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003974 | chr2:189331760-189827814 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1000932 | chr2:189542210-189677277 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv536088 | chr2:189542210-189677277 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:189541200-189545000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 2 | chr2:189544000-189545000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
