Variant report

Variant	rs11676859
Chromosome Location	chr2:189558987-189558988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10173411	0.88[ASN][1000 genomes]
rs10199260	1.00[JPT][hapmap]
rs1066766	0.82[EUR][1000 genomes]
rs10931369	0.84[EUR][1000 genomes]
rs10931376	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11683089	0.86[EUR][1000 genomes]
rs11683183	0.86[EUR][1000 genomes]
rs11695316	1.00[JPT][hapmap]
rs11889220	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11889402	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12463744	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12475894	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12476413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12988921	0.80[EUR][1000 genomes]
rs13011602	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13393057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13396968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13412448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1354902	1.00[JPT][hapmap]
rs1354904	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1354908	0.84[EUR][1000 genomes]
rs1354910	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1395868	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1507551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1507560	0.83[EUR][1000 genomes]
rs1507561	0.84[EUR][1000 genomes]
rs1567184	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1580993	0.84[EUR][1000 genomes]
rs1588121	0.82[EUR][1000 genomes]
rs1911603	0.83[AMR][1000 genomes]
rs2350903	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4146570	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4591284	0.87[EUR][1000 genomes]
rs4667231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59665009	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6707212	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6708451	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6756504	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs698552	0.82[EUR][1000 genomes]
rs698553	0.88[ASN][1000 genomes]
rs698554	0.82[EUR][1000 genomes]
rs698556	0.82[EUR][1000 genomes]
rs698557	0.83[EUR][1000 genomes]
rs7419798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7420808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7422739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7423554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7582643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7587596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7596299	0.86[EUR][1000 genomes]
rs7602180	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7609211	0.88[ASN][1000 genomes]
rs781261	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs781280	0.86[CEU][hapmap]
rs8273	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs955813	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9752583	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1842768	chr2:189555506-189635696	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv962045	chr2:189558969-189572331	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189555400-189560600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:189557000-189559000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:189557200-189559000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:189558400-189560600	Weak transcription	HMEC	breast
5	chr2:189558800-189560400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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