Variant report

Variant	rs1354908
Chromosome Location	chr2:189495014-189495015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189493271..189495642-chr2:195994230..195996129,2	K562	blood:
2	chr2:189464505..189467171-chr2:189493961..189496240,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10153871	1.00[ASN][1000 genomes]
rs10172178	1.00[ASN][1000 genomes]
rs10199260	1.00[JPT][hapmap]
rs10203054	1.00[ASN][1000 genomes]
rs10804021	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10931363	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10931369	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10931376	0.87[EUR][1000 genomes]
rs11676859	0.84[EUR][1000 genomes]
rs11679949	1.00[CHB][hapmap]
rs11682895	1.00[CHB][hapmap]
rs11683089	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683183	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685643	1.00[CHB][hapmap]
rs11695177	1.00[CHB][hapmap]
rs11695316	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11889220	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11889402	0.80[EUR][1000 genomes]
rs12463744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12475894	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12476413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12988921	0.93[EUR][1000 genomes]
rs13011602	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13012993	0.85[EUR][1000 genomes]
rs13025659	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13386959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13392850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13393057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13396968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13397653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13412448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13414327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13418031	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1354902	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1354904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs1354910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs1395868	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1507551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1507560	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs1580993	0.98[EUR][1000 genomes]
rs1807235	1.00[ASN][1000 genomes]
rs1911602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911603	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2350903	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935690	0.85[AMR][1000 genomes]
rs4146570	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4453658	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4577225	0.87[ASN][1000 genomes]
rs4591284	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667229	1.00[JPT][hapmap]
rs4667231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6707212	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6708451	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709557	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6744275	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6756504	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7419798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7420808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7421510	1.00[CHB][hapmap]
rs7422739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7423554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7579593	1.00[CHB][hapmap]
rs7582643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7587596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7596299	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7602180	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs781261	1.00[CHB][hapmap]
rs781280	1.00[CHB][hapmap]
rs8273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs955813	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189492000-189496600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:189492400-189495400	Enhancers	NHDF-Ad	bronchial
3	chr2:189493200-189495400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:189493200-189495800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:189493200-189496000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:189493200-189496000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:189493400-189495400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:189493400-189495400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:189493400-189495400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:189493400-189496000	Enhancers	Hela-S3	cervix
11	chr2:189493400-189496400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:189493600-189495400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:189493800-189495400	Enhancers	A549	lung
14	chr2:189493800-189495600	Enhancers	Osteobl	bone
15	chr2:189493800-189496400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr2:189494000-189495200	Enhancers	NH-A	brain
17	chr2:189494000-189495600	Enhancers	Adipose Nuclei	Adipose
18	chr2:189494000-189496200	Enhancers	NHLF	lung
19	chr2:189494000-189496400	Enhancers	Fetal Stomach	stomach
20	chr2:189494200-189495400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr2:189494200-189495400	Enhancers	Fetal Muscle Leg	muscle
22	chr2:189494200-189495600	Enhancers	Rectal Smooth Muscle	rectum
23	chr2:189494200-189496200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr2:189494200-189496200	Enhancers	Stomach Smooth Muscle	stomach
25	chr2:189494200-189496600	Enhancers	Ovary	ovary
26	chr2:189494400-189495600	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr2:189494400-189495800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:189494400-189497000	Enhancers	Fetal Lung	lung
29	chr2:189494600-189495400	Enhancers	Aorta	Aorta
30	chr2:189494600-189497200	Enhancers	Colon Smooth Muscle	Colon

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