Variant report

Variant	rs3935690
Chromosome Location	chr2:189485156-189485157
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189474730..189476735-chr2:189484207..189485935,2	K562	blood:
2	chr2:189484574..189486120-chr2:189488843..189490646,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10173369	0.82[EUR][1000 genomes]
rs10211141	1.00[ASN][1000 genomes]
rs1066766	0.87[EUR][1000 genomes]
rs10931369	0.81[EUR][1000 genomes]
rs10931374	0.83[AMR][1000 genomes]
rs11683089	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11683183	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11686702	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463744	0.81[EUR][1000 genomes]
rs12693504	0.82[EUR][1000 genomes]
rs1354902	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1354904	0.82[EUR][1000 genomes]
rs1354908	0.85[AMR][1000 genomes]
rs1354910	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1395869	0.82[EUR][1000 genomes]
rs1507560	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1507561	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1580993	0.81[EUR][1000 genomes]
rs1588121	0.87[EUR][1000 genomes]
rs1605460	0.82[EUR][1000 genomes]
rs16830169	0.82[EUR][1000 genomes]
rs1911602	0.85[AMR][1000 genomes]
rs2882532	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146571	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591284	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs6434291	0.82[EUR][1000 genomes]
rs6434292	0.82[EUR][1000 genomes]
rs6708451	0.80[EUR][1000 genomes]
rs698552	0.87[EUR][1000 genomes]
rs698554	0.87[EUR][1000 genomes]
rs698556	0.87[EUR][1000 genomes]
rs698557	0.86[EUR][1000 genomes]
rs7577912	0.82[EUR][1000 genomes]
rs7596299	0.80[EUR][1000 genomes]
rs7599978	0.82[EUR][1000 genomes]
rs8273	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv834489	chr2:189329027-189494224	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189484800-189494600	Weak transcription	Aorta	Aorta

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