Variant report

Variant	rs7579593
Chromosome Location	chr2:189396005-189396006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10185750	1.00[GIH][hapmap]
rs10804021	1.00[CEU][hapmap]
rs10931353	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10931357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931363	1.00[GIH][hapmap]
rs10931368	0.86[EUR][1000 genomes]
rs11678035	0.86[EUR][1000 genomes]
rs11678294	0.93[EUR][1000 genomes]
rs11679949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11683340	0.93[EUR][1000 genomes]
rs11683909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11683969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11688482	0.86[EUR][1000 genomes]
rs11689113	1.00[EUR][1000 genomes]
rs11693105	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11694636	1.00[EUR][1000 genomes]
rs11695177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11695316	1.00[CEU][hapmap]
rs12151605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475894	1.00[CEU][hapmap]
rs12476413	1.00[CEU][hapmap]
rs12997039	1.00[CEU][hapmap]
rs13025659	1.00[CEU][hapmap]
rs13386959	1.00[CEU][hapmap]
rs13392080	1.00[MEX][hapmap]
rs13392850	1.00[CEU][hapmap]
rs13393057	1.00[CEU][hapmap]
rs13393442	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13396968	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs13397653	1.00[CEU][hapmap]
rs13403508	1.00[MEX][hapmap]
rs13412448	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs13414327	1.00[CEU][hapmap]
rs13414813	1.00[MEX][hapmap]
rs13418031	1.00[CEU][hapmap]
rs1507551	1.00[CEU][hapmap]
rs34323074	0.86[EUR][1000 genomes]
rs4453658	1.00[CEU][hapmap]
rs4667231	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs57067423	1.00[EUR][1000 genomes]
rs57210291	0.86[EUR][1000 genomes]
rs58306067	1.00[ASN][1000 genomes]
rs59668663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894296	0.86[EUR][1000 genomes]
rs61500341	0.80[EUR][1000 genomes]
rs6434287	1.00[MEX][hapmap]
rs6707212	1.00[CEU][hapmap]
rs6709557	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6744275	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6756504	1.00[CEU][hapmap]
rs72896824	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896833	1.00[EUR][1000 genomes]
rs72896844	1.00[EUR][1000 genomes]
rs72896851	1.00[EUR][1000 genomes]
rs72896856	1.00[EUR][1000 genomes]
rs72896869	0.86[EUR][1000 genomes]
rs72896876	0.86[EUR][1000 genomes]
rs72896879	0.86[EUR][1000 genomes]
rs72896898	0.86[EUR][1000 genomes]
rs72898830	0.86[EUR][1000 genomes]
rs72898840	0.86[EUR][1000 genomes]
rs72898843	0.86[EUR][1000 genomes]
rs72898858	0.86[EUR][1000 genomes]
rs72898866	0.86[EUR][1000 genomes]
rs72898876	0.86[EUR][1000 genomes]
rs72898887	0.86[EUR][1000 genomes]
rs72898898	0.86[EUR][1000 genomes]
rs72900830	0.86[EUR][1000 genomes]
rs72900842	0.86[EUR][1000 genomes]
rs72900845	0.86[EUR][1000 genomes]
rs72900848	0.86[EUR][1000 genomes]
rs72900849	0.86[EUR][1000 genomes]
rs72900870	0.86[EUR][1000 genomes]
rs72900874	0.86[EUR][1000 genomes]
rs72900893	0.86[EUR][1000 genomes]
rs72900899	0.86[EUR][1000 genomes]
rs72902608	0.86[EUR][1000 genomes]
rs72902659	0.86[EUR][1000 genomes]
rs72905569	1.00[EUR][1000 genomes]
rs72905578	1.00[EUR][1000 genomes]
rs72905586	1.00[EUR][1000 genomes]
rs72905596	1.00[EUR][1000 genomes]
rs72905601	1.00[EUR][1000 genomes]
rs72907612	1.00[EUR][1000 genomes]
rs72907614	1.00[EUR][1000 genomes]
rs72907632	1.00[EUR][1000 genomes]
rs72907664	1.00[EUR][1000 genomes]
rs72907686	1.00[EUR][1000 genomes]
rs72907691	1.00[EUR][1000 genomes]
rs72907697	1.00[EUR][1000 genomes]
rs72909505	0.82[EUR][1000 genomes]
rs72909509	1.00[EUR][1000 genomes]
rs72909519	1.00[EUR][1000 genomes]
rs72909524	1.00[EUR][1000 genomes]
rs72909525	1.00[EUR][1000 genomes]
rs72909527	1.00[EUR][1000 genomes]
rs72909531	1.00[EUR][1000 genomes]
rs72909536	0.93[EUR][1000 genomes]
rs72909549	1.00[EUR][1000 genomes]
rs72909551	1.00[EUR][1000 genomes]
rs72909552	1.00[EUR][1000 genomes]
rs72909553	1.00[EUR][1000 genomes]
rs72909559	1.00[EUR][1000 genomes]
rs72909566	1.00[EUR][1000 genomes]
rs72909568	1.00[EUR][1000 genomes]
rs72909571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909590	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909598	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911432	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911463	1.00[EUR][1000 genomes]
rs72911465	1.00[EUR][1000 genomes]
rs72911476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72913327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72913360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72913365	1.00[EUR][1000 genomes]
rs7419798	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7420808	1.00[CEU][hapmap]
rs7421510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7423329	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7423378	1.00[MEX][hapmap]
rs7423554	1.00[CEU][hapmap]
rs7582643	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7587596	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7593824	1.00[MEX][hapmap]
rs7602180	1.00[CEU][hapmap]
rs9288154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv834489	chr2:189329027-189494224	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv533110	chr2:189354436-189462552	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189329200-189399000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:189383200-189422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:189383200-189423800	Weak transcription	Placenta	Placenta
4	chr2:189384800-189442200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:189385400-189396400	Weak transcription	Psoas Muscle	Psoas
6	chr2:189387800-189404000	Weak transcription	A549	lung
7	chr2:189388200-189434000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:189392600-189397600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:189392600-189400600	Weak transcription	Ovary	ovary
10	chr2:189392600-189406800	Weak transcription	HUVEC	blood vessel
11	chr2:189393600-189397800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:189394000-189397400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:189394600-189402400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:189394800-189399200	Weak transcription	NHLF	lung
15	chr2:189395000-189396200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:189395000-189397000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:189395000-189397200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:189395000-189415600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr2:189395000-189421800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:189395000-189422200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:189395200-189400200	Weak transcription	Fetal Lung	lung
22	chr2:189395400-189421800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr2:189396000-189400000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr2:189396000-189402200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr2:189396000-189413000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links