Variant report

Variant	rs72900899
Chromosome Location	chr2:189567263-189567264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189560390..189562782-chr2:189566828..189569265,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11676569	0.86[EUR][1000 genomes]
rs11678035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679949	0.86[EUR][1000 genomes]
rs11685643	0.86[EUR][1000 genomes]
rs11688482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56805876	0.96[AFR][1000 genomes]
rs57067423	0.86[EUR][1000 genomes]
rs58512807	0.88[AFR][1000 genomes]
rs6748622	0.85[AFR][1000 genomes]
rs72896824	0.86[EUR][1000 genomes]
rs72896833	0.86[EUR][1000 genomes]
rs72896844	0.86[EUR][1000 genomes]
rs72896851	0.86[EUR][1000 genomes]
rs72896856	0.86[EUR][1000 genomes]
rs72900852	0.86[EUR][1000 genomes]
rs72900854	0.86[EUR][1000 genomes]
rs72900855	0.86[EUR][1000 genomes]
rs72900857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900862	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902642	1.00[ASN][1000 genomes]
rs72902659	1.00[EUR][1000 genomes]
rs72904689	0.81[AFR][1000 genomes]
rs72904695	0.81[AFR][1000 genomes]
rs72904699	1.00[EUR][1000 genomes]
rs72906610	1.00[EUR][1000 genomes]
rs72911476	0.86[EUR][1000 genomes]
rs72911497	0.86[EUR][1000 genomes]
rs72911499	0.86[EUR][1000 genomes]
rs72911501	0.86[EUR][1000 genomes]
rs72913327	0.86[EUR][1000 genomes]
rs72913360	0.86[EUR][1000 genomes]
rs72913365	0.86[EUR][1000 genomes]
rs7423329	0.80[EUR][1000 genomes]
rs7579593	0.86[EUR][1000 genomes]
rs7579655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1842768	chr2:189555506-189635696	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv962045	chr2:189558969-189572331	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2760584	chr2:189564499-189584350	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv437306	chr2:189565261-189584653	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3460377	chr2:189566007-189571105	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3460378	chr2:189566007-189571105	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1003736	chr2:189567044-189579317	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189561200-189569400	Weak transcription	NHDF-Ad	bronchial
2	chr2:189567000-189570200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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