Variant report

Variant	rs7579655
Chromosome Location	chr2:189541807-189541808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10804021	1.00[CEU][hapmap]
rs10931368	0.86[EUR][1000 genomes]
rs11676569	1.00[EUR][1000 genomes]
rs11678035	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679949	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11682895	1.00[CHB][hapmap]
rs11685643	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11688482	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692432	0.82[EUR][1000 genomes]
rs11695177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11695316	1.00[CEU][hapmap]
rs12475894	1.00[CEU][hapmap]
rs12476413	1.00[CEU][hapmap]
rs12997039	1.00[CEU][hapmap]
rs13025659	1.00[CEU][hapmap]
rs13392850	1.00[CEU][hapmap]
rs13393057	1.00[CEU][hapmap]
rs13396968	1.00[CEU][hapmap]
rs13412448	1.00[CEU][hapmap]
rs13414327	1.00[CEU][hapmap]
rs13418031	1.00[CEU][hapmap]
rs1507551	1.00[CEU][hapmap]
rs34323074	0.86[EUR][1000 genomes]
rs4667231	1.00[CEU][hapmap]
rs56805876	0.89[AFR][1000 genomes]
rs57210291	0.86[EUR][1000 genomes]
rs58512807	0.82[AFR][1000 genomes]
rs60894296	0.86[EUR][1000 genomes]
rs61500341	0.80[EUR][1000 genomes]
rs6707212	1.00[CEU][hapmap]
rs6710263	1.00[YRI][hapmap]
rs6714395	0.85[YRI][hapmap]
rs6756504	1.00[CEU][hapmap]
rs72896869	0.86[EUR][1000 genomes]
rs72896876	0.86[EUR][1000 genomes]
rs72896879	0.86[EUR][1000 genomes]
rs72896898	0.86[EUR][1000 genomes]
rs72898830	0.86[EUR][1000 genomes]
rs72898840	0.86[EUR][1000 genomes]
rs72898843	0.86[EUR][1000 genomes]
rs72898858	0.86[EUR][1000 genomes]
rs72898866	0.86[EUR][1000 genomes]
rs72898876	0.86[EUR][1000 genomes]
rs72898887	0.86[EUR][1000 genomes]
rs72898898	0.86[EUR][1000 genomes]
rs72900830	0.86[EUR][1000 genomes]
rs72900842	0.86[EUR][1000 genomes]
rs72900845	0.86[EUR][1000 genomes]
rs72900848	0.86[EUR][1000 genomes]
rs72900849	0.86[EUR][1000 genomes]
rs72900852	1.00[EUR][1000 genomes]
rs72900854	1.00[EUR][1000 genomes]
rs72900855	1.00[EUR][1000 genomes]
rs72900857	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900862	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900870	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900874	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900899	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902642	1.00[ASN][1000 genomes]
rs72902659	0.86[EUR][1000 genomes]
rs72904699	0.86[EUR][1000 genomes]
rs72906610	0.86[EUR][1000 genomes]
rs7419798	1.00[CEU][hapmap]
rs7420808	1.00[CEU][hapmap]
rs7421510	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7423329	1.00[CEU][hapmap]
rs7423554	1.00[CEU][hapmap]
rs7579593	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7582643	1.00[CEU][hapmap]
rs7587596	1.00[CEU][hapmap]
rs7602180	1.00[CEU][hapmap]
rs781261	1.00[CHB][hapmap]
rs781280	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189539400-189542400	Enhancers	HSMM	muscle
2	chr2:189539600-189543400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:189540000-189542400	Enhancers	Osteobl	bone
4	chr2:189540200-189542200	Enhancers	NHDF-Ad	bronchial
5	chr2:189540800-189542400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:189541200-189545000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:189541600-189543400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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