Variant report

Variant	rs61500341
Chromosome Location	chr2:189528016-189528017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10931368	0.93[EUR][1000 genomes]
rs11676569	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679949	0.80[EUR][1000 genomes]
rs11683909	0.80[EUR][1000 genomes]
rs11683969	0.80[EUR][1000 genomes]
rs11685643	0.80[EUR][1000 genomes]
rs11692432	1.00[ASN][1000 genomes]
rs11693105	0.80[EUR][1000 genomes]
rs11695177	0.93[EUR][1000 genomes]
rs34323074	0.93[EUR][1000 genomes]
rs57067423	0.80[EUR][1000 genomes]
rs57210291	0.93[EUR][1000 genomes]
rs59668663	0.80[EUR][1000 genomes]
rs60894296	0.93[EUR][1000 genomes]
rs72896824	0.80[EUR][1000 genomes]
rs72896833	0.80[EUR][1000 genomes]
rs72896844	0.80[EUR][1000 genomes]
rs72896851	0.80[EUR][1000 genomes]
rs72896856	0.80[EUR][1000 genomes]
rs72896869	0.93[EUR][1000 genomes]
rs72896876	0.93[EUR][1000 genomes]
rs72896879	0.93[EUR][1000 genomes]
rs72896898	0.93[EUR][1000 genomes]
rs72898830	0.93[EUR][1000 genomes]
rs72898840	0.93[EUR][1000 genomes]
rs72898843	0.93[EUR][1000 genomes]
rs72898858	0.93[EUR][1000 genomes]
rs72898866	0.93[EUR][1000 genomes]
rs72898876	0.93[EUR][1000 genomes]
rs72898887	0.93[EUR][1000 genomes]
rs72898898	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898900	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900830	0.93[EUR][1000 genomes]
rs72900842	0.93[EUR][1000 genomes]
rs72900845	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900848	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900849	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900852	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900854	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900855	0.80[EUR][1000 genomes]
rs72900857	0.80[EUR][1000 genomes]
rs72900861	0.80[EUR][1000 genomes]
rs72909598	0.80[EUR][1000 genomes]
rs72911406	0.80[EUR][1000 genomes]
rs72911432	0.80[EUR][1000 genomes]
rs72911439	0.80[EUR][1000 genomes]
rs72911445	0.80[EUR][1000 genomes]
rs72911448	0.80[EUR][1000 genomes]
rs72911463	0.80[EUR][1000 genomes]
rs72911465	0.80[EUR][1000 genomes]
rs72911476	0.80[EUR][1000 genomes]
rs72911497	0.80[EUR][1000 genomes]
rs72911499	0.80[EUR][1000 genomes]
rs72911501	0.80[EUR][1000 genomes]
rs72913327	0.80[EUR][1000 genomes]
rs72913360	0.80[EUR][1000 genomes]
rs72913365	0.80[EUR][1000 genomes]
rs7340152	0.81[AFR][1000 genomes]
rs7579593	0.80[EUR][1000 genomes]
rs7579655	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189524800-189529200	Weak transcription	NH-A	brain
2	chr2:189525000-189528800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:189525000-189528800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:189525000-189529200	Weak transcription	Osteobl	bone
5	chr2:189525000-189529400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:189525000-189529800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:189525000-189532800	Weak transcription	A549	lung
8	chr2:189525000-189534000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:189528000-189528200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:189528000-189528200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:189528000-189528200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:189528000-189528200	Enhancers	NHDF-Ad	bronchial
13	chr2:189528000-189528200	Enhancers	NHLF	lung

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