Variant report

Variant	rs72900861
Chromosome Location	chr2:189544370-189544371
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10931368	0.86[EUR][1000 genomes]
rs11676569	1.00[EUR][1000 genomes]
rs11678035	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688482	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692432	0.82[EUR][1000 genomes]
rs11695177	0.86[EUR][1000 genomes]
rs34323074	0.86[EUR][1000 genomes]
rs56805876	0.96[AFR][1000 genomes]
rs57210291	0.86[EUR][1000 genomes]
rs58512807	0.88[AFR][1000 genomes]
rs60894296	0.86[EUR][1000 genomes]
rs61500341	0.80[EUR][1000 genomes]
rs6748622	0.85[AFR][1000 genomes]
rs72896869	0.86[EUR][1000 genomes]
rs72896876	0.86[EUR][1000 genomes]
rs72896879	0.86[EUR][1000 genomes]
rs72896898	0.86[EUR][1000 genomes]
rs72898830	0.86[EUR][1000 genomes]
rs72898840	0.86[EUR][1000 genomes]
rs72898843	0.86[EUR][1000 genomes]
rs72898858	0.86[EUR][1000 genomes]
rs72898866	0.86[EUR][1000 genomes]
rs72898876	0.86[EUR][1000 genomes]
rs72898887	0.86[EUR][1000 genomes]
rs72898898	0.86[EUR][1000 genomes]
rs72900830	0.86[EUR][1000 genomes]
rs72900842	0.86[EUR][1000 genomes]
rs72900845	0.86[EUR][1000 genomes]
rs72900848	0.86[EUR][1000 genomes]
rs72900849	0.86[EUR][1000 genomes]
rs72900852	1.00[EUR][1000 genomes]
rs72900854	1.00[EUR][1000 genomes]
rs72900855	1.00[EUR][1000 genomes]
rs72900857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900862	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900870	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902642	1.00[ASN][1000 genomes]
rs72902659	0.86[EUR][1000 genomes]
rs72904689	0.81[AFR][1000 genomes]
rs72904695	0.81[AFR][1000 genomes]
rs72904699	0.86[EUR][1000 genomes]
rs72906610	0.86[EUR][1000 genomes]
rs7579655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189541200-189545000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:189544000-189545000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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