Variant report

Variant	rs72900874
Chromosome Location	chr2:189554652-189554653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11676569	0.86[EUR][1000 genomes]
rs11678035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679949	0.86[EUR][1000 genomes]
rs11685643	0.86[EUR][1000 genomes]
rs11688482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693105	0.86[EUR][1000 genomes]
rs56805876	0.96[AFR][1000 genomes]
rs57067423	0.86[EUR][1000 genomes]
rs58512807	0.88[AFR][1000 genomes]
rs6748622	0.85[AFR][1000 genomes]
rs72896824	0.86[EUR][1000 genomes]
rs72896833	0.86[EUR][1000 genomes]
rs72896844	0.86[EUR][1000 genomes]
rs72896851	0.86[EUR][1000 genomes]
rs72896856	0.86[EUR][1000 genomes]
rs72900852	0.86[EUR][1000 genomes]
rs72900854	0.86[EUR][1000 genomes]
rs72900855	0.86[EUR][1000 genomes]
rs72900857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900862	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902642	1.00[ASN][1000 genomes]
rs72902659	1.00[EUR][1000 genomes]
rs72904689	0.81[AFR][1000 genomes]
rs72904695	0.81[AFR][1000 genomes]
rs72904699	1.00[EUR][1000 genomes]
rs72906610	1.00[EUR][1000 genomes]
rs72911463	0.86[EUR][1000 genomes]
rs72911465	0.86[EUR][1000 genomes]
rs72911476	0.86[EUR][1000 genomes]
rs72911497	0.86[EUR][1000 genomes]
rs72911499	0.86[EUR][1000 genomes]
rs72911501	0.86[EUR][1000 genomes]
rs72913327	0.86[EUR][1000 genomes]
rs72913360	0.86[EUR][1000 genomes]
rs72913365	0.86[EUR][1000 genomes]
rs7423329	0.80[EUR][1000 genomes]
rs7579593	0.86[EUR][1000 genomes]
rs7579655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189551000-189557200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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