Variant report

Variant	rs10212846
Chromosome Location	chr4:15417480-15417481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10000250	1.00[ASN][1000 genomes]
rs10012928	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022530	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10033082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1024757	0.83[ASN][1000 genomes]
rs1024760	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698110	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698382	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838330	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7697373	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9993580	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9993656	1.00[ASN][1000 genomes]
rs9994702	1.00[ASN][1000 genomes]
rs9995927	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:15407600-15418000	Weak transcription	Left Ventricle	heart
3	chr4:15411200-15419800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:15411400-15418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:15411400-15418600	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:15412400-15421800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:15412600-15421800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:15412800-15420800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:15413000-15419400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:15413200-15418000	Weak transcription	Right Atrium	heart
11	chr4:15413600-15418000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:15413600-15418000	Weak transcription	Spleen	Spleen
13	chr4:15415200-15417800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:15415800-15417600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:15416200-15417600	Enhancers	Primary B cells from cord blood	blood
16	chr4:15416200-15418000	Weak transcription	Aorta	Aorta
17	chr4:15416400-15417800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:15416400-15417800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr4:15416400-15418000	Weak transcription	Fetal Thymus	thymus
20	chr4:15416400-15419000	Weak transcription	Adipose Nuclei	Adipose
21	chr4:15416400-15419400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:15416600-15418200	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:15416600-15419200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:15416800-15417800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:15416800-15417800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:15416800-15418000	Weak transcription	Fetal Heart	heart
27	chr4:15416800-15418000	Weak transcription	Ovary	ovary
28	chr4:15416800-15418200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:15416800-15421800	Weak transcription	NHLF	lung
30	chr4:15416800-15422000	Weak transcription	Brain Substantia Nigra	brain
31	chr4:15416800-15422000	Weak transcription	HSMMtube	muscle
32	chr4:15416800-15422000	Weak transcription	NH-A	brain
33	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
34	chr4:15417000-15418000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:15417000-15418800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:15417000-15418800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:15417000-15419200	Weak transcription	Fetal Stomach	stomach
38	chr4:15417000-15421800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:15417000-15421800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:15417000-15421800	Weak transcription	HSMM	muscle
41	chr4:15417000-15421800	Weak transcription	Osteobl	bone
42	chr4:15417200-15417600	Weak transcription	Primary B cells from peripheral blood	blood

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