Variant report

Variant	rs4698110
Chromosome Location	chr4:15454278-15454279
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15444346..15446758-chr4:15452590..15454838,2	MCF-7	breast:
2	chr4:15451138..15453425-chr4:15453445..15455847,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10000250	0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10012928	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10022530	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10033082	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10212846	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1024757	1.00[CHB][hapmap]
rs1024760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4423869	0.86[CEU][hapmap]
rs4698382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6838330	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7665294	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7697373	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9993580	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9993656	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9994702	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9995927	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:15448400-15458800	Weak transcription	Primary T cells from cord blood	blood
4	chr4:15451800-15454800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:15451800-15454800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:15452200-15454800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:15452200-15454800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:15452200-15454800	Enhancers	Aorta	Aorta
9	chr4:15452400-15454400	Enhancers	Colon Smooth Muscle	Colon
10	chr4:15452400-15454400	Enhancers	Placenta	Placenta
11	chr4:15452400-15454400	Enhancers	HSMMtube	muscle
12	chr4:15452400-15454600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:15452400-15454600	Enhancers	Fetal Stomach	stomach
14	chr4:15452400-15454800	Enhancers	HMEC	breast
15	chr4:15452600-15454400	Enhancers	Hela-S3	cervix
16	chr4:15452600-15454600	Enhancers	Adipose Nuclei	Adipose
17	chr4:15452600-15454800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:15452600-15454800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:15452600-15456600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:15452800-15454400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:15453000-15458800	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:15453400-15454800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:15453400-15455800	Enhancers	NHLF	lung
24	chr4:15453400-15456600	Weak transcription	Liver	Liver
25	chr4:15453400-15458200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:15453400-15458400	Weak transcription	Primary B cells from cord blood	blood
27	chr4:15453400-15458600	Weak transcription	Left Ventricle	heart
28	chr4:15453600-15454800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:15453600-15454800	Enhancers	HSMM	muscle
30	chr4:15453600-15456600	Weak transcription	Ovary	ovary
31	chr4:15453600-15456600	Weak transcription	Psoas Muscle	Psoas
32	chr4:15453600-15456800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:15453600-15457600	Enhancers	NHDF-Ad	bronchial
34	chr4:15453600-15458400	Weak transcription	Spleen	Spleen
35	chr4:15453600-15458600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:15453600-15459000	Weak transcription	Brain Anterior Caudate	brain
37	chr4:15453600-15459000	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:15453800-15454400	Enhancers	Stomach Smooth Muscle	stomach
39	chr4:15453800-15454600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:15453800-15454800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:15453800-15454800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:15453800-15454800	Enhancers	NH-A	brain
43	chr4:15453800-15454800	Enhancers	Osteobl	bone
44	chr4:15453800-15455800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:15453800-15458600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:15454000-15454400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr4:15454000-15454600	Enhancers	NHEK	skin
48	chr4:15454000-15454800	Enhancers	A549	lung
49	chr4:15454000-15458400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr4:15454000-15458800	Weak transcription	Fetal Lung	lung

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