Variant report

Variant	rs1024760
Chromosome Location	chr4:15428182-15428183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10000250	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012928	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022530	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033082	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10212846	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1024757	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2215809	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4423869	0.86[CEU][hapmap]
rs4698110	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838330	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665294	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7697373	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9993580	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993656	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994702	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995927	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
2	chr4:15419000-15428600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:15419800-15428600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr4:15420800-15428800	Weak transcription	Fetal Stomach	stomach
5	chr4:15423000-15428400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:15423200-15428400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:15423200-15428600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:15423200-15429000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:15423200-15429000	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:15425400-15428800	Enhancers	NHEK	skin
11	chr4:15426200-15428400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:15427000-15431400	Active TSS	Aorta	Aorta
13	chr4:15428000-15429600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:15428000-15430000	Weak transcription	Ovary	ovary
15	chr4:15428000-15430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:15428000-15430200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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