Variant report

Variant	rs10216261
Chromosome Location	chr7:104112730-104112731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10234384	0.87[MEX][hapmap]
rs1034572	0.84[JPT][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap]
rs1034574	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs11972050	0.92[CEU][hapmap];0.92[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs12705219	0.81[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap]
rs6465990	0.84[YRI][hapmap]
rs6465992	0.88[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap]
rs6949376	0.81[JPT][hapmap]
rs6949536	0.84[JPT][hapmap]
rs6949602	0.84[JPT][hapmap]
rs6949811	0.84[JPT][hapmap]
rs6955069	0.84[JPT][hapmap]
rs6961457	0.88[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap]
rs7776632	0.88[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10216261	POLR2J	cis	parietal	SCAN
rs10216261	FBXO24	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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