Variant report

Variant	rs6949376
Chromosome Location	chr7:104110406-104110407
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10216261	0.81[JPT][hapmap]
rs1034572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11762662	0.84[CEU][hapmap]
rs12333888	0.84[CEU][hapmap]
rs12705218	0.84[CEU][hapmap];0.80[CHB][hapmap]
rs17137948	1.00[CEU][hapmap]
rs2073792	0.86[JPT][hapmap]
rs6465990	0.92[CEU][hapmap];0.81[YRI][hapmap]
rs6949536	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6949602	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6949811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6955069	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6965697	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs756669	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104109400-104111000	Enhancers	Fetal Intestine Small	intestine
2	chr7:104110000-104110600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:104110200-104110600	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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