Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1034572	0.82[CEU][hapmap];0.82[GIH][hapmap]
rs11760238	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11761138	1.00[JPT][hapmap]
rs12333888	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs12533385	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12539136	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12705218	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13232636	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13234705	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs13238097	1.00[JPT][hapmap]
rs17137948	0.82[CEU][hapmap];0.82[GIH][hapmap]
rs17335819	1.00[JPT][hapmap]
rs2073790	0.99[ASN][1000 genomes]
rs2073792	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2188172	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs6946555	1.00[YRI][hapmap]
rs6949376	0.84[CEU][hapmap]
rs6949536	0.89[CEU][hapmap];0.85[GIH][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap]
rs6949602	0.88[CEU][hapmap]
rs6949811	0.82[CEU][hapmap]
rs6955069	0.89[CEU][hapmap]
rs6965697	0.82[CEU][hapmap];0.82[GIH][hapmap]
rs756669	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11762662	POLR2J	cis	parietal	SCAN
rs11762662	FBXO24	cis	cerebellum	SCAN
rs11762662	PIK3CG	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104127800-104128200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:104127800-104128200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:104127800-104128200	Enhancers	Brain Anterior Caudate	brain
4	chr7:104127800-104128400	Enhancers	Brain Germinal Matrix	brain
5	chr7:104127800-104128600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr7:104128000-104128600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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