Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1034572	0.83[JPT][hapmap]
rs11760238	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs11761138	0.94[JPT][hapmap]
rs11762662	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12333888	0.95[CEU][hapmap]
rs12533385	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12539136	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12705218	0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs13232636	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs13234705	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs13238097	0.94[JPT][hapmap]
rs17335819	0.94[JPT][hapmap]
rs2073790	1.00[ASN][1000 genomes]
rs2188172	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6949376	0.86[JPT][hapmap]
rs6949536	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs6949602	0.83[CEU][hapmap];0.84[JPT][hapmap]
rs6949811	0.83[JPT][hapmap]
rs6955069	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs756669	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104120600-104123800	Enhancers	Fetal Brain Female	brain
2	chr7:104121400-104123400	Enhancers	Pancreas	Pancrea
3	chr7:104122400-104123600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:104122600-104123600	Enhancers	Fetal Brain Male	brain
5	chr7:104123000-104123600	Enhancers	Brain Germinal Matrix	brain
6	chr7:104123200-104127800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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