Variant report
| Variant | rs13238097 |
|---|---|
| Chromosome Location | chr7:104146123-104146124 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:104142316..104144690-chr7:104144743..104146958,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11760238 | 1.00[JPT][hapmap] |
| rs11761138 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11762662 | 1.00[JPT][hapmap] |
| rs12533385 | 1.00[JPT][hapmap] |
| rs12539136 | 1.00[JPT][hapmap] |
| rs12705218 | 1.00[JPT][hapmap] |
| rs13232636 | 1.00[JPT][hapmap] |
| rs13234705 | 1.00[JPT][hapmap] |
| rs17335819 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2073792 | 0.94[JPT][hapmap] |
| rs2188172 | 1.00[JPT][hapmap] |
| rs756669 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888925 | chr7:104047599-104170560 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
