Variant report

Variant	rs756669
Chromosome Location	chr7:104144632-104144633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1034572	0.83[JPT][hapmap]
rs11760238	1.00[JPT][hapmap]
rs11761138	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11762662	1.00[JPT][hapmap]
rs12533385	1.00[JPT][hapmap]
rs12539136	1.00[JPT][hapmap]
rs12705218	1.00[JPT][hapmap]
rs13232636	1.00[JPT][hapmap]
rs13234705	1.00[JPT][hapmap]
rs13238097	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs17335819	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2073792	0.94[JPT][hapmap]
rs2188172	1.00[JPT][hapmap]
rs6949376	0.85[JPT][hapmap]
rs6949536	0.83[JPT][hapmap]
rs6949602	0.83[JPT][hapmap]
rs6949811	0.82[JPT][hapmap]
rs6955069	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1802646	chr7:104143090-104144905	Inactive region	Chromatin interactive region	n/a	n/a	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs756669	TRIP6	cis	parietal	SCAN
rs756669	NRCAM	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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