Variant report

Variant	rs6949536
Chromosome Location	chr7:104110492-104110493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10216261	0.84[JPT][hapmap]
rs1034572	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs11760238	0.80[MEX][hapmap]
rs11762662	0.89[CEU][hapmap];0.85[GIH][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap]
rs12333888	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs12705218	0.92[CEU][hapmap]
rs13234705	0.84[MEX][hapmap]
rs17137948	0.92[CEU][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap]
rs2073792	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs2188172	0.84[MEX][hapmap]
rs6465990	0.89[CEU][hapmap]
rs6949376	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6949602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6949811	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6955069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6965697	0.92[CEU][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap]
rs756669	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6949536	SH2B2	cis	cerebellum	SCAN
rs6949536	TRIM56	cis	parietal	SCAN
rs6949536	FBXO24	cis	cerebellum	SCAN
rs6949536	POLR2J	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104109400-104111000	Enhancers	Fetal Intestine Small	intestine
2	chr7:104110000-104110600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:104110200-104110600	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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