Variant report

Variant	rs6965697
Chromosome Location	chr7:104113349-104113350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10234384	0.86[JPT][hapmap]
rs1034572	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs1034574	0.86[JPT][hapmap]
rs11762662	0.82[CEU][hapmap];0.82[GIH][hapmap]
rs11772914	0.86[JPT][hapmap]
rs11972050	0.86[JPT][hapmap]
rs12333888	0.82[CEU][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs12705218	0.85[CEU][hapmap]
rs12705219	0.86[JPT][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap]
rs17137948	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap]
rs6465990	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs6465992	0.86[JPT][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap]
rs6949376	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6949536	0.92[CEU][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs6949602	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs6949811	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6955069	0.92[CEU][hapmap]
rs6961457	0.86[JPT][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap]
rs7776632	0.86[JPT][hapmap];0.83[MEX][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6965697	TRIM56	cis	parietal	SCAN
rs6965697	SH2B2	cis	cerebellum	SCAN
rs6965697	FBXO24	cis	cerebellum	SCAN
rs6965697	POLR2J	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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