Variant report

Variant	rs12333888
Chromosome Location	chr7:104117988-104117989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1034572	0.82[CEU][hapmap];0.88[GIH][hapmap];0.81[TSI][hapmap]
rs11520992	0.85[JPT][hapmap]
rs11760238	0.85[MEX][hapmap]
rs11762662	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12705218	0.96[CEU][hapmap]
rs17137948	0.82[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs2073792	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6949376	0.84[CEU][hapmap]
rs6949536	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs6949602	0.88[CEU][hapmap]
rs6949811	0.82[CEU][hapmap]
rs6955069	0.89[CEU][hapmap]
rs6965697	0.82[CEU][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12333888	POLR2J	cis	parietal	SCAN
rs12333888	PIK3CG	cis	cerebellum	SCAN
rs12333888	FBXO24	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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