Variant report

Variant	rs11760238
Chromosome Location	chr7:104123545-104123546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11761138	1.00[JPT][hapmap]
rs11762662	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12333888	0.85[MEX][hapmap]
rs12533385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12539136	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs12705218	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13232636	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13234705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs13238097	1.00[JPT][hapmap]
rs17335819	1.00[JPT][hapmap]
rs2073790	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073792	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs2188172	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs6949536	0.80[MEX][hapmap]
rs756669	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11760238	TRIM56	cis	parietal	SCAN
rs11760238	LRCH4	cis	parietal	SCAN
rs11760238	PIK3CG	cis	cerebellum	SCAN
rs11760238	PMS2L1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104120600-104123800	Enhancers	Fetal Brain Female	brain
2	chr7:104122400-104123600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:104122600-104123600	Enhancers	Fetal Brain Male	brain
4	chr7:104123000-104123600	Enhancers	Brain Germinal Matrix	brain
5	chr7:104123200-104127800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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