Variant report

Variant	rs10216767
Chromosome Location	chr8:108508471-108508472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr8:108507990-108508501	MCF-7	breast:	n/a	n/a
2	POLR2A	chr8:108507229-108510408	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr8:108507286-108508871	MCF10A-Er-Src	breast:	n/a	chr8:108507470-108507482 chr8:108507470-108507481 chr8:108508255-108508266 chr8:108507472-108507480
4	RAD21	chr8:108507893-108508540	A549	lung:	n/a	n/a
5	RAD21	chr8:108507986-108508481	ECC-1	luminal epithelium:	n/a	n/a
6	MAFK	chr8:108508050-108508754	K562	blood:	n/a	chr8:108508258-108508267
7	MYC	chr8:108507149-108508883	NB4	blood:	n/a	chr8:108507661-108507668 chr8:108507188-108507197
8	RAD21	chr8:108507534-108508805	IMR90	lung:	n/a	chr8:108508755-108508767
9	TEAD4	chr8:108507999-108508482	K562	blood:	n/a	n/a
10	CTCF	chr8:108507968-108508512	HCT-116	colon:	n/a	n/a
11	ATF1	chr8:108508076-108508478	K562	blood:	n/a	n/a
12	TEAD4	chr8:108508034-108508564	K562	blood:	n/a	n/a
13	CTCF	chr8:108507869-108508501	SK-N-SH	brain:	n/a	n/a
14	CTCF	chr8:108507438-108508839	A549	lung:	n/a	n/a
15	MYC	chr8:108508035-108508808	H1-hESC	embryonic stem cell:	n/a	n/a
16	STAT3	chr8:108508042-108508721	MCF10A-Er-Src	breast:	n/a	n/a
17	RCOR1	chr8:108508087-108508472	K562	blood:	n/a	n/a
18	FOSL2	chr8:108507249-108508532	A549	lung:	n/a	chr8:108507470-108507482 chr8:108507472-108507480
19	CTCF	chr8:108507963-108508477	MCF-7	breast:	n/a	n/a
20	CTCF	chr8:108508053-108508514	MCF-7	breast:	n/a	n/a
21	CTCF	chr8:108507822-108508522	IMR90	lung:	n/a	n/a
22	CTCF	chr8:108507946-108508529	K562	blood:	n/a	n/a
23	TAL1	chr8:108508056-108508541	K562	blood:	n/a	n/a
24	JUND	chr8:108508070-108508474	K562	blood:	n/a	n/a
25	MAFK	chr8:108508035-108508760	H1-hESC	embryonic stem cell:	n/a	chr8:108508258-108508267
26	TCF12	chr8:108507353-108508507	A549	lung:	n/a	chr8:108507780-108507789
27	FOS	chr8:108507302-108508853	MCF10A-Er-Src	breast:	n/a	chr8:108507470-108507482 chr8:108507470-108507481 chr8:108508255-108508266 chr8:108507472-108507480
28	RAD21	chr8:108507962-108508492	HCT-116	colon:	n/a	n/a
29	ARID3A	chr8:108508084-108508490	K562	blood:	n/a	n/a
30	RAD21	chr8:108508018-108508481	HCT-116	colon:	n/a	n/a
31	RAD21	chr8:108507947-108508517	ECC-1	luminal epithelium:	n/a	n/a
32	BACH1	chr8:108507381-108508744	H1-hESC	embryonic stem cell:	n/a	n/a
33	EP300	chr8:108508105-108508506	K562	blood:	n/a	n/a
34	RAD21	chr8:108507843-108508610	SK-N-SH	brain:	n/a	n/a
35	MYC	chr8:108507285-108508487	MCF10A-Er-Src	breast:	n/a	chr8:108507661-108507668
36	ZNF143	chr8:108508030-108508473	K562	blood:	n/a	n/a
37	RAD21	chr8:108507993-108508524	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108507981..108510207-chr8:108513209..108515922,2	K562	blood:
2	chr8:108080564..108081493-chr8:108508119..108508723,3	MCF-7	breast:

Variant related genes	Relation type
ANGPT1	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1157412	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257142	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1368489	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368490	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433170	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1433173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4496939	0.87[ASN][1000 genomes]
rs4734972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013053	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951759	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611861	chr8:108504907-108509116	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv611862	chr8:108504907-108513341	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1845767	chr8:108504907-108515373	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1849422	chr8:108504907-108515373	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1825455	chr8:108504907-108518274	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv611866	chr8:108504961-108509116	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv611869	chr8:108505161-108509116	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108502800-108509200	Weak transcription	NHEK	skin
2	chr8:108505000-108508800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:108505400-108509200	Enhancers	Dnd41	blood
4	chr8:108506600-108509000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:108506600-108509200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:108506600-108509800	Active TSS	Fetal Kidney	kidney
7	chr8:108506600-108510200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:108506800-108509000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr8:108506800-108510400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:108506800-108510600	Active TSS	Stomach Smooth Muscle	stomach
11	chr8:108507000-108508600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:108507000-108509600	Active TSS	Brain Anterior Caudate	brain
13	chr8:108507000-108510000	Active TSS	Adipose Nuclei	Adipose
14	chr8:108507000-108510000	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr8:108507000-108510200	Active TSS	Ovary	ovary
16	chr8:108507000-108510200	Active TSS	Right Atrium	heart
17	chr8:108507200-108508600	Bivalent/Poised TSS	Fetal Brain Male	brain
18	chr8:108507200-108508600	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr8:108507200-108508800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:108507200-108508800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr8:108507200-108510000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:108507200-108510200	Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr8:108507200-108510200	Active TSS	Brain Hippocampus Middle	brain
24	chr8:108507200-108510200	Active TSS	Fetal Lung	lung
25	chr8:108507200-108510200	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr8:108507200-108510400	Active TSS	Aorta	Aorta
27	chr8:108507400-108510000	Active TSS	Brain Angular Gyrus	brain
28	chr8:108507400-108510200	Active TSS	Brain Cingulate Gyrus	brain
29	chr8:108507400-108510200	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr8:108507400-108510200	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr8:108507400-108510400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:108507400-108510400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:108507600-108508600	Active TSS	Fetal Muscle Leg	muscle
34	chr8:108507600-108509000	Flanking Active TSS	A549	lung
35	chr8:108507600-108509200	Enhancers	K562	blood
36	chr8:108507600-108510000	Active TSS	Psoas Muscle	Psoas
37	chr8:108507600-108510000	Active TSS	Osteobl	bone
38	chr8:108507600-108510200	Active TSS	Fetal Stomach	stomach
39	chr8:108507600-108510200	Active TSS	Right Ventricle	heart
40	chr8:108507600-108510200	Active TSS	NHLF	lung
41	chr8:108507600-108510400	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr8:108507600-108510400	Flanking Active TSS	HUVEC	blood vessel
43	chr8:108507800-108508800	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr8:108507800-108509000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:108507800-108510000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr8:108507800-108510200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:108507800-108510200	Active TSS	Brain Substantia Nigra	brain
48	chr8:108507800-108510200	Active TSS	NHDF-Ad	bronchial
49	chr8:108508000-108508600	Active TSS	Primary hematopoietic stem cells	blood
50	chr8:108508000-108508600	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links