Variant report

Variant	rs4734972
Chromosome Location	chr8:108473294-108473295
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10216767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157411	0.80[EUR][1000 genomes]
rs1157412	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257142	0.80[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1368489	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368490	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433170	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1433173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4496939	0.87[ASN][1000 genomes]
rs6469116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013053	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951759	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108467400-108474600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:108470200-108474400	Weak transcription	Psoas Muscle	Psoas
3	chr8:108470400-108474000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:108470400-108474000	Weak transcription	Aorta	Aorta
5	chr8:108470600-108473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:108470600-108474200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:108470600-108474200	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:108471000-108474400	Weak transcription	Fetal Kidney	kidney
9	chr8:108471000-108474600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:108471400-108473800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:108471600-108473400	Enhancers	Fetal Lung	lung
12	chr8:108471800-108473800	Enhancers	NHLF	lung
13	chr8:108471800-108474000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:108472000-108473800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:108472200-108473400	Enhancers	Ovary	ovary
16	chr8:108472200-108475600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:108472400-108473400	Weak transcription	Osteobl	bone
18	chr8:108472400-108474200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:108472600-108474000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:108472600-108474000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:108472800-108473800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:108472800-108473800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:108472800-108474000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:108473000-108473600	Weak transcription	Fetal Brain Male	brain
25	chr8:108473000-108474400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:108473200-108473600	Weak transcription	Adipose Nuclei	Adipose
27	chr8:108473200-108474200	Weak transcription	NHDF-Ad	bronchial
28	chr8:108473200-108479800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links