Variant report

Variant	rs13257142
Chromosome Location	chr8:108499883-108499884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10096335	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10216767	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1157412	0.82[ASN][1000 genomes]
rs1368489	0.82[ASN][1000 genomes]
rs1368490	0.82[ASN][1000 genomes]
rs1368491	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1433168	0.89[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs1433170	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs1433173	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs4734972	0.80[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs55638121	0.83[EUR][1000 genomes]
rs6469116	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6982185	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7013053	0.89[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825819	chr8:108495057-108506185	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1832361	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844679	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108494800-108502000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:108497000-108501200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:108497000-108503600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:108497600-108500000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:108497600-108504200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:108497800-108500200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:108497800-108503600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:108497800-108508400	Weak transcription	Left Ventricle	heart
9	chr8:108498000-108500000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:108498200-108501600	Weak transcription	NH-A	brain
11	chr8:108498200-108501800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:108498200-108502600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:108498200-108506800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:108498400-108500800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:108498400-108501400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:108498400-108501400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:108498400-108502000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:108498400-108502400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:108498400-108502400	Weak transcription	Brain Anterior Caudate	brain
20	chr8:108498400-108502600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:108498400-108506800	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:108498400-108507400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:108498600-108501200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:108498600-108501200	Weak transcription	Fetal Intestine Small	intestine
25	chr8:108498600-108501400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:108498600-108501800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:108498800-108501800	Weak transcription	Osteobl	bone
28	chr8:108499000-108500200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:108499000-108501200	Weak transcription	Adipose Nuclei	Adipose
30	chr8:108499000-108502200	Weak transcription	NHDF-Ad	bronchial
31	chr8:108499000-108503200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr8:108499000-108506600	Weak transcription	Brain Substantia Nigra	brain
33	chr8:108499400-108500000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr8:108499400-108500600	Enhancers	Primary hematopoietic stem cells	blood
35	chr8:108499400-108501000	Weak transcription	Right Atrium	heart
36	chr8:108499400-108501200	Weak transcription	Fetal Kidney	kidney
37	chr8:108499400-108501400	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:108499400-108501400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr8:108499400-108501800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr8:108499400-108501800	Weak transcription	Fetal Heart	heart
41	chr8:108499400-108502000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:108499400-108502000	Weak transcription	Psoas Muscle	Psoas
43	chr8:108499400-108502000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:108499400-108502400	Weak transcription	Right Ventricle	heart
45	chr8:108499400-108502400	Weak transcription	NHLF	lung
46	chr8:108499400-108507000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr8:108499600-108501200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:108499600-108501400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:108499600-108501400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr8:108499600-108501800	Weak transcription	Ovary	ovary

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