Variant report

Variant	rs1021706
Chromosome Location	chr3:111578865-111578866
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111576494..111579081-chr3:111696421..111699159,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10934112	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10934116	0.93[EUR][1000 genomes]
rs1282975	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1282977	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1282978	0.96[EUR][1000 genomes]
rs1282980	0.96[EUR][1000 genomes]
rs1282981	0.96[EUR][1000 genomes]
rs1282984	0.96[EUR][1000 genomes]
rs1282992	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13063198	0.98[EUR][1000 genomes]
rs17490346	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1913495	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3925082	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682318	0.91[EUR][1000 genomes]
rs60787620	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9847568	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9854765	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9869555	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111577400-111579200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
2	chr3:111577400-111580200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:111577400-111581000	Active TSS	Right Ventricle	heart
4	chr3:111577400-111581200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:111577400-111582000	Active TSS	Aorta	Aorta
6	chr3:111577400-111582000	Active TSS	HSMMtube	muscle
7	chr3:111577600-111579400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
8	chr3:111577600-111579600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:111577600-111579600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:111577600-111579600	Active TSS	Duodenum Mucosa	Duodenum
11	chr3:111577600-111580200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:111577600-111580200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
13	chr3:111577600-111580200	Active TSS	Placenta Amnion	Placenta Amnion
14	chr3:111577600-111580400	Active TSS	Fetal Heart	heart
15	chr3:111577600-111581200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr3:111577600-111581800	Active TSS	Left Ventricle	heart
17	chr3:111577800-111579000	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr3:111577800-111579000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:111577800-111579000	Bivalent/Poised TSS	Psoas Muscle	Psoas
20	chr3:111577800-111579200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:111577800-111579600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:111577800-111579600	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr3:111577800-111579600	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr3:111577800-111579600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:111577800-111579600	Active TSS	Fetal Intestine Large	intestine
26	chr3:111577800-111579800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:111577800-111579800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:111577800-111579800	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr3:111577800-111579800	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr3:111577800-111579800	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr3:111577800-111579800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:111577800-111579800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:111577800-111579800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:111577800-111579800	Active TSS	Fetal Kidney	kidney
35	chr3:111577800-111579800	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr3:111577800-111579800	Active TSS	Pancreas	Pancrea
37	chr3:111577800-111579800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
38	chr3:111577800-111579800	Active TSS	NHEK	skin
39	chr3:111577800-111579800	Active TSS	Osteobl	bone
40	chr3:111577800-111580000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr3:111577800-111580000	Active TSS	H9 Cell Line	embryonic stem cell
42	chr3:111577800-111580000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:111577800-111580000	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr3:111577800-111580000	Active TSS	A549	lung
45	chr3:111577800-111580000	Active TSS	Hela-S3	cervix
46	chr3:111577800-111580200	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr3:111577800-111580200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:111577800-111580200	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr3:111577800-111580200	Active TSS	Adipose Nuclei	Adipose
50	chr3:111577800-111580200	Active TSS	Stomach Mucosa	stomach

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