Variant report

Variant	rs4682318
Chromosome Location	chr3:111586899-111586900
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1021706	0.91[EUR][1000 genomes]
rs10934112	0.84[EUR][1000 genomes]
rs10934116	0.90[EUR][1000 genomes]
rs1282975	0.91[EUR][1000 genomes]
rs1282977	0.91[EUR][1000 genomes]
rs1282978	0.88[EUR][1000 genomes]
rs1282980	0.88[EUR][1000 genomes]
rs1282981	0.88[EUR][1000 genomes]
rs1282984	0.88[EUR][1000 genomes]
rs1282992	0.91[EUR][1000 genomes]
rs13063198	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17490346	0.91[EUR][1000 genomes]
rs1913493	0.87[AFR][1000 genomes]
rs1913495	0.87[EUR][1000 genomes]
rs3925082	0.86[EUR][1000 genomes]
rs60787620	0.85[EUR][1000 genomes]
rs967011	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9847568	0.86[EUR][1000 genomes]
rs9854765	0.86[EUR][1000 genomes]
rs9869555	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111579800-111588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:111579800-111589000	Weak transcription	Pancreas	Pancrea
3	chr3:111580000-111589200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:111581400-111593800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:111582200-111593200	Weak transcription	Lung	lung
6	chr3:111583000-111587600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:111583800-111591200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:111584000-111587200	Enhancers	Right Ventricle	heart
9	chr3:111584400-111587000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:111584400-111587200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:111584400-111587600	Weak transcription	NHEK	skin
12	chr3:111584400-111587800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:111584400-111589200	Enhancers	Colon Smooth Muscle	Colon
14	chr3:111584400-111589800	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:111584400-111591000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:111584600-111587200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:111584600-111587600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:111584600-111587800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:111584600-111588000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:111584600-111588400	Weak transcription	Fetal Stomach	stomach
21	chr3:111584600-111588400	Weak transcription	HepG2	liver
22	chr3:111584600-111588400	Weak transcription	NHDF-Ad	bronchial
23	chr3:111584600-111588600	Weak transcription	Fetal Lung	lung
24	chr3:111584600-111588800	Weak transcription	Stomach Mucosa	stomach
25	chr3:111584600-111590800	Weak transcription	Fetal Kidney	kidney
26	chr3:111584600-111591000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:111584600-111593200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:111584600-111603400	Weak transcription	Fetal Intestine Large	intestine
29	chr3:111584800-111591200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:111585200-111587600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:111585200-111588400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:111585200-111588400	Weak transcription	HMEC	breast
33	chr3:111585200-111589000	Weak transcription	NHLF	lung
34	chr3:111585200-111591200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:111585200-111591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:111585200-111591200	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:111585200-111591200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
39	chr3:111585400-111587000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:111585400-111587200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:111585400-111587600	Weak transcription	Liver	Liver
42	chr3:111585400-111588000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:111585400-111588400	Weak transcription	HUVEC	blood vessel
44	chr3:111585400-111591000	Weak transcription	Ovary	ovary
45	chr3:111585400-111592800	Weak transcription	HSMM	muscle
46	chr3:111585400-111593400	Weak transcription	Psoas Muscle	Psoas
47	chr3:111585400-111603400	Weak transcription	Spleen	Spleen
48	chr3:111585400-111609000	Weak transcription	Esophagus	oesophagus
49	chr3:111585600-111587600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr3:111585600-111587600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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